|
| Status |
Public on Oct 15, 2020 |
| Title |
BM3_liver_28d |
| Sample type |
SRA |
| |
|
| Source name |
liver
|
| Organism |
Mus musculus |
| Characteristics |
strain: BLAB/c
tissue: liver
|
| Treatment protocol |
The mice were challenged percutaneously with 40 ± 1 Schistosoma japonicum cercariae.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA libraries were prepared for sequencing using standard Illumina protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
HiSeq X Ten |
| |
|
| Data processing |
Illumina Casava software used for basecalling.
Sequenced reads were trimmed for adaptor sequence and removed low-quality bases, then were mapped to mouse genome mm10. Gene expression levels were estimated by the RSEM algorithm.
Genome_build: mm10
Supplementary_files_format_and_content: tab-delimited text files include the expression values of UCSC known genes.
|
| |
|
| Submission date |
Jul 19, 2017 |
| Last update date |
Oct 08, 2020 |
| Contact name |
hong li |
| E-mail(s) |
lihong01@sibs.ac.cn
|
| Organization name |
SIBS
|
| Street address |
320 Yueyang Road
|
| City |
Shanghai |
| ZIP/Postal code |
200031 |
| Country |
China |
| |
|
| Platform ID |
GPL21273 |
| Series (1) |
| GSE101656 |
Mice liver RNA-Seq during Schistosoma japonicum infection |
|
| Relations |
| BioSample |
SAMN07370827 |
| SRA |
SRX3020661 |
