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Sample GSM269763 Query DataSets for GSM269763
Status Public on Feb 20, 2009
Title control, biological rep15
Sample type RNA
Source name normal lung tissues, control, biological rep15
Organism Homo sapiens
Characteristics Normal lung tissues obtained from the disease free margins with normal histology of lung cancer resection.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA followed by RNeasy cleanup was performed according to the manufacturers' instructions.
Label Cy3
Label protocol Cy3 labeled cRNA were prepared according to the standard Agilent protocol from 500ng total RNA.
Hybridization protocol Following fragmentation, 1.5 ug of cRNA were hybridized for 17 hr at 65C on Agilent 4x44k Whole Human Genome Array. Arrays were washed according to the manufacturer's protocol.
Scan protocol Agilent Scanner protocol
Description Lung tissue samples obtained from the University of Pittsburgh Health Sciences Tissue Bank. Gene expression data from a control lung.
Data processing Agilent Feature Extraction
Submission date Feb 28, 2008
Last update date Mar 26, 2008
Contact name Kazuhisa Konishi
Phone 412-647-3156
Organization name University of Pittsburgh
Department Pulmonry, Allergy, and Critical Care Medicine
Lab Kaminski Lab
Street address 1212 Kaufmann Building 3471 Fifth Ave
City Pittsburgh
State/province PA
ZIP/Postal code 15213
Country USA
Platform ID GPL4133
Series (1)
GSE10667 MMP1 and MMP7 as potential peripheral blood biomarkers in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE gProcessedSignal

Data table
12 469.0215
13 7.116288
14 1849.47
15 74.25778
16 8611.321
17 100.095
18 861.2409
19 14598.83
20 10.38163
21 7.214189
22 23272.96
23 49.77311
24 2796.351
25 4006.537
26 347.3586
27 1777.09
28 7.27887
29 7.289065
30 7190.895
31 61.25381

Total number of rows: 43376

Table truncated, full table size 620 Kbytes.

Supplementary file Size Download File type/resource
GSM269763.txt.gz 7.8 Mb (ftp)(http) TXT
Processed data included within Sample table

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