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Sample GSM269762 Query DataSets for GSM269762
Status Public on Feb 20, 2009
Title control, biological rep14
Sample type RNA
Source name normal lung tissues, control, biological rep14
Organism Homo sapiens
Characteristics Normal lung tissues obtained from the disease free margins with normal histology of lung cancer resection.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA followed by RNeasy cleanup was performed according to the manufacturers' instructions.
Label Cy3
Label protocol Cy3 labeled cRNA were prepared according to the standard Agilent protocol from 500ng total RNA.
Hybridization protocol Following fragmentation, 1.5 ug of cRNA were hybridized for 17 hr at 65C on Agilent 4x44k Whole Human Genome Array. Arrays were washed according to the manufacturer's protocol.
Scan protocol Agilent Scanner protocol
Description Lung tissue samples obtained from the University of Pittsburgh Health Sciences Tissue Bank. Gene expression data from a control lung.
Data processing Agilent Feature Extraction
Submission date Feb 28, 2008
Last update date Mar 26, 2008
Contact name Kazuhisa Konishi
Phone 412-647-3156
Organization name University of Pittsburgh
Department Pulmonry, Allergy, and Critical Care Medicine
Lab Kaminski Lab
Street address 1212 Kaufmann Building 3471 Fifth Ave
City Pittsburgh
State/province PA
ZIP/Postal code 15213
Country USA
Platform ID GPL4133
Series (1)
GSE10667 MMP1 and MMP7 as potential peripheral blood biomarkers in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE gProcessedSignal

Data table
12 1397.188
13 53.13582
14 959.3735
15 56.13461
16 8083.471
17 99.72202
18 432.7403
19 27008.18
20 60.49925
21 8.272368
22 24647.88
23 48.63585
24 3045.395
25 5061.84
26 289.1897
27 1175.048
28 8.4278
29 8.45126
30 8220.302
31 77.7325

Total number of rows: 43376

Table truncated, full table size 620 Kbytes.

Supplementary file Size Download File type/resource
GSM269762.txt.gz 7.9 Mb (ftp)(http) TXT
Processed data included within Sample table

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