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Sample GSM269761 Query DataSets for GSM269761
Status Public on Feb 20, 2009
Title control, biological rep13
Sample type RNA
Source name normal lung tissues, control, biological rep13
Organism Homo sapiens
Characteristics Normal lung tissues obtained from the disease free margins with normal histology of lung cancer resection.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA followed by RNeasy cleanup was performed according to the manufacturers' instructions.
Label Cy3
Label protocol Cy3 labeled cRNA were prepared according to the standard Agilent protocol from 500ng total RNA.
Hybridization protocol Following fragmentation, 1.5 ug of cRNA were hybridized for 17 hr at 65C on Agilent 4x44k Whole Human Genome Array. Arrays were washed according to the manufacturer's protocol.
Scan protocol Agilent Scanner protocol
Description Lung tissue samples obtained from the University of Pittsburgh Health Sciences Tissue Bank. Gene expression data from a control lung.
Data processing Agilent Feature Extraction
Submission date Feb 28, 2008
Last update date Mar 26, 2008
Contact name Kazuhisa Konishi
Phone 412-647-3156
Organization name University of Pittsburgh
Department Pulmonry, Allergy, and Critical Care Medicine
Lab Kaminski Lab
Street address 1212 Kaufmann Building 3471 Fifth Ave
City Pittsburgh
State/province PA
ZIP/Postal code 15213
Country USA
Platform ID GPL4133
Series (1)
GSE10667 MMP1 and MMP7 as potential peripheral blood biomarkers in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE gProcessedSignal

Data table
12 225.8731
13 10.07249
14 761.9162
15 36.01889
16 5443.898
17 81.99746
18 375.0817
19 17829.94
20 24.17882
21 7.387286
22 21337.67
23 25.50735
24 2266.75
25 3420.894
26 405.1452
27 1196.111
28 7.477567
29 7.491209
30 6816.977
31 111.7147

Total number of rows: 43376

Table truncated, full table size 620 Kbytes.

Supplementary file Size Download File type/resource
GSM269761.txt.gz 7.8 Mb (ftp)(http) TXT
Processed data included within Sample table

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