|
| Status |
Public on Dec 31, 2008 |
| Title |
Transgenic Adenocarcinoma of the Mouse Prostate (TRAMP) tumor (TRAMP-9) |
| Sample type |
RNA |
| |
|
| Source name |
Transgenic Adenocarcinoma of the Mouse Prostate (TRAMP) tumor
|
| Organism |
Mus musculus |
| Characteristics |
TRAMP Tumors
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol
|
| Label |
biotin
|
| Label protocol |
Affymetrix standard protocol.
|
| |
|
| Hybridization protocol |
As described by Affymetrix. Standard protocol.
|
| Scan protocol |
Arrays were scanned with the GeneChip Scanner 3000 and GeneChip Operating Software acquired raw fluorescence data.
|
| Description |
TRAMP Tumors
|
| Data processing |
The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
|
| |
|
| Submission date |
Feb 14, 2008 |
| Last update date |
Aug 28, 2018 |
| Contact name |
BIDMC GENOMICS |
| E-mail(s) |
mbhasin@bidmc.harvard.edu
|
| Phone |
6176670884
|
| Organization name |
Beth Israel Deaconess Medical Center
|
| Department |
Genomics Center
|
| Street address |
4 BlackFan Circle
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02115 |
| Country |
USA |
| |
|
| Platform ID |
GPL1261 |
| Series (1) |
| GSE10525 |
Gene expression profile of Transgenic Adenocarcinoma of the Mouse Prostate (TRAMP) |
|
| Relations |
| Reanalyzed by |
GSE119085 |
