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Sample GSM254293 Query DataSets for GSM254293
Status Public on Jan 04, 2008
Title PBMCs-Healthy-H126_Healthy_B
Sample type RNA
 
Source name PBMCs from Healthy patient.
Organism Homo sapiens
Characteristics Age: 15 yrs, when sample taken.
Gender: F
Ethnicity: (Ethnicity Not Reported)
Race: White
Illness: Healthy
pH<7.30 at time of diagnosis: n/a
Extracted molecule total RNA
Extraction protocol RNeasy Mini
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
 
Hybridization protocol EukGE-WS2v5_450
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 System.
Description Healthy patient.
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date Jan 03, 2008
Last update date Jan 03, 2008
Contact name Ellen Grishman
E-mail(s) ellen.grishman@childrens.com
Organization name UTSW Medical Center
Street address 5323 Harry Hines Blvd
City Dallas
State/province TX
ZIP/Postal code 75390
Country USA
 
Platform ID GPL97
Series (1)
GSE9006 Gene expression in PBMCs from children with diabetes

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 1801.4 P
AFFX-BioB-M_at 3210.1 P
AFFX-BioB-3_at 2004.9 P
AFFX-BioC-5_at 6112.2 P
AFFX-BioC-3_at 6157.5 P
AFFX-BioDn-5_at 13396.4 P
AFFX-BioDn-3_at 21905.5 P
AFFX-CreX-5_at 68046.5 P
AFFX-CreX-3_at 90648.2 P
AFFX-DapX-5_at 46.6 A
AFFX-DapX-M_at 29.8 A
AFFX-DapX-3_at 17.3 A
AFFX-LysX-5_at 125.5 A
AFFX-LysX-M_at 76.5 A
AFFX-LysX-3_at 64.9 A
AFFX-PheX-5_at 11.9 A
AFFX-PheX-M_at 65.3 A
AFFX-PheX-3_at 157.1 A
AFFX-ThrX-5_at 78.6 A
AFFX-ThrX-M_at 80.4 A

Total number of rows: 22645

Table truncated, full table size 398 Kbytes.




Supplementary file Size Download File type/resource
GSM254293.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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