|
| Status |
Public on Feb 28, 2017 |
| Title |
unbiased_p5dr_9 |
| Sample type |
SRA |
| |
|
| Source name |
Dorsal Raphe Nucleus
|
| Organism |
Mus musculus |
| Characteristics |
tissue: Dorsal Raphe Nucleus
Sex: female
age: P5
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Qiagen RNAeasy Kit
Illumina TruSeq RNASeq
50bp single end reads
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
F1rP5_1
|
| Data processing |
Make Cast/B6 Transcriptome Index with IUPAC codes to indicate SNPs that will be heterozygous in the offspring
Align to hybrid transcriptome index with Novoalign
Useq TranscriptomeParser
Count non-redundant maternal and paternal reads reads with custom pysam based python script.
Genome_build: mm9
Supplementary_files_format_and_content: bam files were generated with novoalign and TranscriptomeParser
|
| |
|
| Submission date |
Jan 18, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Christopher Gregg |
| E-mail(s) |
chris.gregg@neuro.utah.edu
|
| Organization name |
University of Utah
|
| Department |
Neurobiology and Anatomy
|
| Street address |
323 Wintrobe Bldg 530, 20 North 1900 East
|
| City |
Salt Lake City |
| State/province |
Utah |
| ZIP/Postal code |
84132-3401 |
| Country |
USA |
| |
|
| Platform ID |
GPL13112 |
| Series (2) |
| GSE93787 |
Diverse Non-Genetic Allele Specific Expression Effects Shape Genetic Architecture at the Cellular Level in the Mammalian Brain [HybridMouseDRN] |
| GSE93788 |
Diverse Non-Genetic Allele Specific Expression Effects Shape Genetic Architecture at the Cellular Level in the Mammalian Brain |
|
| Relations |
| BioSample |
SAMN06238155 |
| SRA |
SRX2500764 |
