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Sample GSM2458708 Query DataSets for GSM2458708
Status Public on Jan 14, 2017
Title IPF_1041, Timepoint 3
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 3
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 1.577268202
7892502 1.950955431
7892503 2.191714525
7892504 7.892445411
7892505 3.235091893
7892506 1.755100618
7892507 4.968596163
7892508 3.497804099
7892509 7.999669404
7892510 1.90552265
7892511 4.86023128
7892512 4.404680203
7892513 2.473836713
7892514 7.365152546
7892515 8.584340088
7892516 5.668569699
7892517 4.547739959
7892518 1.683897719
7892519 1.782489428
7892520 8.050897321

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458708_IPF_1041_3.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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