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Sample GSM2458681 Query DataSets for GSM2458681
Status Public on Jan 14, 2017
Title IPF_1034, Timepoint 2
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 2
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 1.734838593
7892502 3.041417633
7892503 1.830129509
7892504 7.565674713
7892505 1.472518992
7892506 1.772722574
7892507 3.366923534
7892508 3.215347164
7892509 7.99167241
7892510 2.129449442
7892511 4.74315451
7892512 3.530926602
7892513 1.877460971
7892514 7.39798644
7892515 8.362019378
7892516 5.902207021
7892517 4.750538907
7892518 1.108310454
7892519 2.109321635
7892520 7.753351072

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458681_IPF_1034_2.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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