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Sample GSM2458661 Query DataSets for GSM2458661
Status Public on Jan 14, 2017
Title IPF_1028, Timepoint 2
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 2
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 1.510617889
7892502 1.612591876
7892503 1.646152567
7892504 6.505641855
7892505 2.786055749
7892506 2.281820217
7892507 3.661488587
7892508 2.011202207
7892509 6.839816965
7892510 2.177419604
7892511 3.478600681
7892512 3.644655742
7892513 2.013803323
7892514 7.000916403
7892515 7.868751538
7892516 4.313825743
7892517 4.812456257
7892518 2.386809305
7892519 2.175945444
7892520 7.001284812

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458661_IPF_1028_2.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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