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Sample GSM2458598 Query DataSets for GSM2458598
Status Public on Jan 14, 2017
Title IPF_1006, Timepoint 1
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 1
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 1.519274262
7892502 3.031945358
7892503 2.381082884
7892504 7.523579843
7892505 2.284020431
7892506 1.984764379
7892507 3.789865131
7892508 2.824880478
7892509 7.570090511
7892510 1.928191735
7892511 4.379749326
7892512 2.824868312
7892513 1.694701293
7892514 7.149422361
7892515 8.173679297
7892516 4.882290249
7892517 4.764135721
7892518 1.665516614
7892519 1.851607573
7892520 7.623742429

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458598_IPF_1006_1.CEL.gz 3.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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