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Sample GSM243727 Query DataSets for GSM243727
Status Public on Aug 04, 2008
Title jurkat_rep1
Sample type RNA
 
Source name Jurkat cells rep 1
Organism Homo sapiens
Characteristics Jurkat, Human T-acute lymphoblastic leukemia
Biomaterial provider ATCC
Treatment protocol Allowed to reach 6 X 10 5 cells/ml.
Growth protocol RPMI-1640 (Mediatech), 10% FBS (Gibco), 2mmol/L L-glutamine (Mediatech), 100IU/ml penicillin, 100 microgram/ml streptomycin, 0.25 microgram/ml amphotericin B (all from Mediatech) at 37 degrees Celsius, 5% carbon dioxide, 95% air, and 80% relative humidity.
Extracted molecule total RNA
Extraction protocol Trizol
Label biotin
Label protocol IVT Labeling Affymetrix
 
Hybridization protocol GeneChip Hybridization oven 640
Scan protocol GeneChip Scanner
Description Jurkat cells are an immortalized line of T lymphocyte cells that are used to study acute T cell leukemia. The cell line was established from peripheral blood of a human with T cell leukemia.
Data processing MAS5.0
 
Submission date Nov 20, 2007
Last update date Aug 28, 2018
Contact name Nathan J. Bowen
E-mail(s) nbowen@cau.edu
Phone 4048808158
Organization name Clark Atlanta University
Department Center for Cancer Research and Therapeutic Development
Lab Cancer Development and Evolution
Street address 223 James P Brawley Drive
City Atlanta
State/province GA
ZIP/Postal code 30314
Country USA
 
Platform ID GPL570
Series (1)
GSE9648 Anticancer metabolites discovered by Computational Metabolomics
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE VALUE
ABS_CALL ABS_CALL
DETECTION P-VALUE DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 360.121 P 0.000753643
AFFX-BioB-M_at 425.527 P 4.42873e-05
AFFX-BioB-3_at 211.924 P 0.00762003
AFFX-BioC-5_at 636.775 P 0.000126798
AFFX-BioC-3_at 889 P 4.42873e-05
AFFX-BioDn-5_at 1765.38 P 4.42873e-05
AFFX-BioDn-3_at 3430.14 P 5.16732e-05
AFFX-CreX-5_at 8449.8 P 5.16732e-05
AFFX-CreX-3_at 8854.6 P 4.42873e-05
AFFX-DapX-5_at 26.094 A 0.382599
AFFX-DapX-M_at 61.5972 A 0.147939
AFFX-DapX-3_at 160.968 P 0.000581214
AFFX-LysX-5_at 29.3969 P 0.0429619
AFFX-LysX-M_at 27.586 A 0.425962
AFFX-LysX-3_at 82.9055 P 0.002867
AFFX-PheX-5_at 7.92292 A 0.749204
AFFX-PheX-M_at 5.65349 A 0.699394
AFFX-PheX-3_at 56.6391 A 0.227636
AFFX-ThrX-5_at 31.6381 A 0.327079
AFFX-ThrX-M_at 5.16119 A 0.932322

Total number of rows: 54675

Table truncated, full table size 1622 Kbytes.




Supplementary file Size Download File type/resource
GSM243727.CEL.gz 5.6 Mb (ftp)(http) CEL
GSM243727.CHP.gz 294.1 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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