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Sample GSM2424155 Query DataSets for GSM2424155
Status Public on Jan 04, 2017
Title ChIP-seq from K562 (ENCLB932WDR)
Sample type SRA
 
Source name Homo sapiens K562 immortalized cell line
Organism Homo sapiens
Characteristics antibody: SIN3A
line: K562
biomaterial_type: immortalized cell line
biosample encode accession: ENCBS383VKK (SAMN06121876)
dev stage: adult
age: 53 year
Sex: female
lab: Michael Snyder, Stanford
health state: chronic myelogenous leukemia (CML)
link: ENCBS383VKK at ENCODE; https://www.encodeproject.org/ENCBS383VKK/
link: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/
link: growth protocol; https://www.encodeproject.org/documents/bdb989a8-e913-40b6-b1d1-314f27181e9c/@@download/attachment/Snyder_K562%20Cell%20Growth%20Protocol.pdf
link: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/2abad4f0-cd36-43de-8cd8-9958aa7fde39/@@download/attachment/ChIP-Seq_protocol_Snyder_lab_GAIIx.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer IIx
 
Description https://www.encodeproject.org/experiments/ENCSR920BLG/
***************
biological replicate number: 1
technical replicate number: 1
description: SIN3A ChIP-seq on human K562
experiment encode accession: ENCSR920BLG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR080EOT
encode release date: 2016-03-02
lab: Michael Snyder, Stanford
library encode accession: ENCLB932WDR
size range: 150-350
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Dec 11, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL10999
Series (1)
GSE92164 ChIP-seq from K562 (ENCSR920BLG)
Relations
BioSample SAMN06121876
SRA SRX2424632
Named Annotation GSM2424155_ENCFF695GOE_peaks_GRCh38.bed.gz
Named Annotation GSM2424155_ENCFF452UEO_fold_change_over_control_GRCh38.bigWig
Named Annotation GSM2424155_ENCFF385GEE_signal_p-value_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2424155_ENCFF092XMT_signal_p-value_hg19.bigWig 438.1 Mb (ftp)(http) BIGWIG
GSM2424155_ENCFF385GEE_signal_p-value_GRCh38.bigWig 481.1 Mb (ftp)(http) BIGWIG
GSM2424155_ENCFF452UEO_fold_change_over_control_GRCh38.bigWig 411.1 Mb (ftp)(http) BIGWIG
GSM2424155_ENCFF665MON_peaks_hg19.bigBed 12.5 Mb (ftp)(http) BIGBED
GSM2424155_ENCFF695GOE_peaks_GRCh38.bed.gz 5.5 Mb (ftp)(http) BED
GSM2424155_ENCFF699SNH_fold_change_over_control_hg19.bigWig 414.8 Mb (ftp)(http) BIGWIG
GSM2424155_ENCFF771ZFN_peaks_GRCh38.bigBed 12.5 Mb (ftp)(http) BIGBED
GSM2424155_ENCFF791GAM_peaks_hg19.bed.gz 5.7 Mb (ftp)(http) BED
GSM2424155_ENCLB932WDR_README.txt.gz 2.0 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file
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