NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2423737 Query DataSets for GSM2423737
Status Public on Jan 04, 2017
Title ChIP-seq from HeLa-S3 (ENCLB716JPW)
Sample type SRA
 
Source name Homo sapiens HeLa-S3 immortalized cell line
Organism Homo sapiens
Characteristics antibody: SREBF2
line: HeLa-S3
biomaterial_type: immortalized cell line
description: Cervical adenocarcinoma
biosample encode accession: ENCBS854BZN (SAMN06122430)
dev stage: adult
age: 31 year
Sex: female
lab: Michael Snyder, Stanford
health state: cervical adenocarcinoma
link: ENCBS854BZN at ENCODE; https://www.encodeproject.org/ENCBS854BZN/
link: Derived from ENCODE donor ENCDO000AAB; https://www.encodeproject.org/ENCDO000AAB/
link: growth protocol; https://www.encodeproject.org/documents/56883321-f44b-4b21-8c60-ee3b2b4aa12a/@@download/attachment/Snyder_HeLa%20S3%20Spinner%20Flask%20Growth%20Protocol.pdf
link: ENCODE dbxrefs Cellosaurus CVCL_0058; http://web.expasy.org/cellosaurus/CVCL_0058
link: ATCC sample source; http://www.atcc.org/Products/All/CCL-2.2.aspx
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/d6c4ad11-71ce-4cf4-97f1-7f635d2de09b/@@download/attachment/ChIP-Seq_protocol_Snyder_lab_HiSeq.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR611WZO/
***************
biological replicate number: 2
technical replicate number: 1
description: SREBF2 ChIP-seq on human HeLa-S3
experiment encode accession: ENCSR611WZO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR760PBD
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB716JPW
size range: 450-650
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Dec 11, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL11154
Series (1)
GSE91912 ChIP-seq from HeLa-S3 (ENCSR611WZO)
Relations
BioSample SAMN06122430
SRA SRX2424193
Named Annotation GSM2423737_ENCFF406OAQ_peaks_GRCh38.bed.gz
Named Annotation GSM2423737_ENCFF310NMF_signal_p-value_GRCh38.bigWig
Named Annotation GSM2423737_ENCFF489MCK_fold_change_over_control_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2423737_ENCFF025DUT_peaks_hg19.bigBed 12.6 Mb (ftp)(http) BIGBED
GSM2423737_ENCFF039TLE_peaks_hg19.bed.gz 6.7 Mb (ftp)(http) BED
GSM2423737_ENCFF081OBL_signal_p-value_hg19.bigWig 1.4 Gb (ftp)(http) BIGWIG
GSM2423737_ENCFF261PYW_fold_change_over_control_hg19.bigWig 1.6 Gb (ftp)(http) BIGWIG
GSM2423737_ENCFF310NMF_signal_p-value_GRCh38.bigWig 1.4 Gb (ftp)(http) BIGWIG
GSM2423737_ENCFF406OAQ_peaks_GRCh38.bed.gz 6.7 Mb (ftp)(http) BED
GSM2423737_ENCFF489MCK_fold_change_over_control_GRCh38.bigWig 1.6 Gb (ftp)(http) BIGWIG
GSM2423737_ENCFF972QGT_peaks_GRCh38.bigBed 12.6 Mb (ftp)(http) BIGBED
GSM2423737_ENCLB716JPW_README.txt.gz 2.0 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap