NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM239401 Query DataSets for GSM239401
Status Public on Sep 22, 2008
Title vastus lateralis, protein intake:0.50 g/kg, young, subject 14
Sample type RNA
 
Source name vastus lateralis, protein intake:0.50 g/kg, young
Organism Homo sapiens
Characteristics Protein intake:0.50 g/kg
Trial:P63
Sex: Male
Age: Y (21-43 y)
Treatment protocol Three randomized controlled feeding trials with protein intakes of 63% (P63: 0.50 g/kg-1/d-1), 94% (P94: 0.75 g/kg-1/d-1), and 125% (P125: 1.00 g/kg-1/d-1) of the recommended dietary allowance (RDA).
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from the frozen muscle sample using Tri-Reagent following the manufacturerÆs instructions. Isolated total RNA was further purified using RNeasy Mini Kits following manufacturerÆs protocol
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from a minimum of 5 ug total RNA
 
Hybridization protocol Affymetrix protocol
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner
Description Gene expression for young male following two weeks of dietary protein intake of 0.50 g/kg
Data processing The raw data were summarized using Affymetrix Microarray Suite (MAS) 5.0 software
 
Submission date Oct 24, 2007
Last update date Aug 28, 2018
Contact name Wayne Campbell
E-mail(s) campbellw@purdue.edu
Phone 765-494-8236
Fax 765-494-0674
Organization name Purdue University
Department Foods and Nutrition
Street address 700 West State Street
City West Lafayette
State/province IN
ZIP/Postal code 47907
Country USA
 
Platform ID GPL570
Series (1)
GSE9419 The skeletal muscle transcript profile reflects responses to inadequate protein intake in younger and older males
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 265.5 M 0.05447
1053_at 72.5 P 0.048995
117_at 26.2 A 0.284747
121_at 412 P 0.019304
1255_g_at 26.2 A 0.52062
1294_at 73.7 A 0.250724
1316_at 37.5 P 0.031336
1320_at 35.2 A 0.602023
1405_i_at 7.4 A 0.801637
1431_at 18.3 A 0.47938
1438_at 36.1 A 0.765443
1487_at 499.7 P 0.011447
1494_f_at 88.1 A 0.204022
1552256_a_at 37.1 A 0.398926
1552257_a_at 88.8 A 0.149658
1552258_at 52.8 P 0.01416
1552261_at 11.5 A 0.398926
1552263_at 6.1 A 0.665527
1552264_a_at 92.8 P 0.005859
1552266_at 6.4 A 0.533936

Total number of rows: 54675

Table truncated, full table size 1410 Kbytes.




Supplementary file Size Download File type/resource
GSM239401.CEL.gz 5.5 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap