NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM239313 Query DataSets for GSM239313
Status Public on Dec 30, 2007
Title HT29 resistant cells replicate 2
Sample type RNA
 
Source name HT29 cells resistant to 10e-5M methotrexate
Organism Homo sapiens
Characteristics colon cancer cell line resistant to 10e-5M methotrexate
Extracted molecule total RNA
Extraction protocol RNeasy Mini kit from Qiagen
Label biotin
Label protocol Affymetrix protocol for HG U133 A 2.0
 
Hybridization protocol Affymetrix protocol for HG U133 A 2.0
Scan protocol Affymetrix protocol for HG U133 A 2.0
Description gene expression profile of HT29 cells resistant to 10e-5M Methotrexate
Data processing Value generated using MAS 5.0 non-scaled.
 
Submission date Oct 23, 2007
Last update date Aug 14, 2011
Contact name Carlos J Ciudad
E-mail(s) cciudad@ub.edu
Phone +34-93-403-4455
Organization name University of Barcelona
Department Biochemistry and Molecular Biology
Lab School of Pharmacy
Street address Av. Juan XXIII-27
City Barcelona
State/province Barcelona
ZIP/Postal code 08028
Country Spain
 
Platform ID GPL571
Series (1)
GSE9412 Transcriptional regulation of aldo-keto reductase 1C1 in human colon cancer cells resistant to methotrexate

Data table header descriptions
ID_REF
VALUE signal
ABS_CALL present or absent
Detection p-value detection p-value

Data table
ID_REF VALUE ABS_CALL Detection p-value
AFFX-BioB-5_at 131.9 P 0.000581
AFFX-BioB-M_at 245.4 P 0.000052
AFFX-BioB-3_at 113.6 P 0.000146
AFFX-BioC-5_at 282.6 P 0.000052
AFFX-BioC-3_at 286.3 P 0.000044
AFFX-BioDn-5_at 289.4 P 0.000044
AFFX-BioDn-3_at 1863.7 P 0.00007
AFFX-CreX-5_at 3240.3 P 0.000044
AFFX-CreX-3_at 5291.8 P 0.000044
AFFX-DapX-5_at 0.5 A 0.957052
AFFX-DapX-M_at 5.1 A 0.41138
AFFX-DapX-3_at 0.9 A 0.945787
AFFX-LysX-5_at 0.3 A 0.957038
AFFX-LysX-M_at 4.4 A 0.574044
AFFX-LysX-3_at 2.6 A 0.425956
AFFX-PheX-5_at 0.5 A 0.910541
AFFX-PheX-M_at 0.3 A 0.994439
AFFX-PheX-3_at 12 A 0.382599
AFFX-ThrX-5_at 3.5 A 0.41138
AFFX-ThrX-M_at 1.2 A 0.772364

Total number of rows: 22277

Table truncated, full table size 573 Kbytes.




Supplementary file Size Download File type/resource
GSM239313.CEL.gz 3.1 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap