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Sample GSM239309 Query DataSets for GSM239309
Status Public on Dec 30, 2007
Title HT29 sensitive cells replicate 1
Sample type RNA
 
Source name HT29 methotrexate sensitive cells
Organism Homo sapiens
Characteristics colon cancer cell line.
Extracted molecule total RNA
Extraction protocol RNeasy Mini kit from Qiagen
Label biotin
Label protocol Affymetrix protocol for HG U133 A 2.0
 
Hybridization protocol Affymetrix protocol for HG U133 A 2.0
Scan protocol Affymetrix protocol for HG U133 A 2.0
Description gene expression profile of HT29 cells sensitive to Methotrexate
Data processing Value generated using MAS 5.0 non-scaled.
 
Submission date Oct 23, 2007
Last update date Aug 14, 2011
Contact name Carlos J Ciudad
E-mail(s) cciudad@ub.edu
Phone +34-93-403-4455
Organization name University of Barcelona
Department Biochemistry and Molecular Biology
Lab School of Pharmacy
Street address Av. Juan XXIII-27
City Barcelona
State/province Barcelona
ZIP/Postal code 08028
Country Spain
 
Platform ID GPL571
Series (1)
GSE9412 Transcriptional regulation of aldo-keto reductase 1C1 in human colon cancer cells resistant to methotrexate

Data table header descriptions
ID_REF
VALUE signal
ABS_CALL present or absent
Detection p-value detection p-value

Data table
ID_REF VALUE ABS_CALL Detection p-value
AFFX-BioB-5_at 166.6 P 0.000297
AFFX-BioB-M_at 335.7 P 0.000044
AFFX-BioB-3_at 154.7 P 0.00006
AFFX-BioC-5_at 337.2 P 0.000044
AFFX-BioC-3_at 333.8 P 0.000044
AFFX-BioDn-5_at 429.6 P 0.000044
AFFX-BioDn-3_at 1861.3 P 0.000044
AFFX-CreX-5_at 3843.9 P 0.000044
AFFX-CreX-3_at 5794.6 P 0.000044
AFFX-DapX-5_at 1.5 A 0.897855
AFFX-DapX-M_at 1.6 A 0.672921
AFFX-DapX-3_at 0.4 A 0.949786
AFFX-LysX-5_at 0.7 A 0.843268
AFFX-LysX-M_at 2.2 A 0.544587
AFFX-LysX-3_at 0.3 A 0.81489
AFFX-PheX-5_at 1.7 A 0.672935
AFFX-PheX-M_at 0.9 A 0.814869
AFFX-PheX-3_at 1.9 A 0.52976
AFFX-ThrX-5_at 0.7 A 0.953518
AFFX-ThrX-M_at 2.2 A 0.588627

Total number of rows: 22277

Table truncated, full table size 572 Kbytes.




Supplementary file Size Download File type/resource
GSM239309.CEL.gz 3.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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