|
| Status |
Public on Jan 26, 2017 |
| Title |
RNA-seq_UCLA9_ESC_p16_SE |
| Sample type |
SRA |
| |
|
| Source name |
Undifferentiated female human embryonic stem cells
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: Human embryonic stem cells
|
| Treatment protocol |
N/A
|
| Extracted molecule |
total RNA |
| Extraction protocol |
as described in paper
as described in paper
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
UCLA9 ESC p16 SE
|
| Data processing |
RNA-seq library reads were mapped to the hg19 reference genome and gene annotation using tophat-2.0.4 (Trapnell et al., 2009) calling bowtie-0.12.8 (Langmead et al., 2009)
HTSeq (Anders et al., 2014) was used to perform gene counts
Genome_build: hg19
Supplementary_files_format_and_content: Tab seperated value spreadsheet of reads counts per gene (rows) for each sample (columns)
|
| |
|
| Submission date |
Oct 19, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Kathrin Plath |
| Organization name |
UCLA
|
| Street address |
615 Charles E. Young Drive South
|
| City |
Los Angeles |
| ZIP/Postal code |
90095 |
| Country |
USA |
| |
|
| Platform ID |
GPL11154 |
| Series (2) |
| GSE88931 |
Human embryonic stem cells do not change their X-inactivation status during differentiation [RNA-Seq] |
| GSE88933 |
Human embryonic stem cells do not change their X-inactivation status during differentiation |
|
| Relations |
| BioSample |
SAMN05924362 |
| SRA |
SRX2251952 |
