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Sample GSM2343888 Query DataSets for GSM2343888
Status Public on Nov 08, 2016
Title small RNA-seq from spleen (ENCLB436NOU)
Sample type SRA
Source name Homo sapiens spleen tissue female adult (51 year)
Organism Homo sapiens
Characteristics tissue_type: spleen
biomaterial_type: tissue
description: Spleen tissue aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS253SDK (SAMN05897023)
age: 51 year
dev stage: adult
donor_id: ENCDO271OUW
Sex: female
lab: Thomas Gingeras, CSHL
link: ENCBS253SDK at ENCODE;
link: Derived from ENCODE donor ENCDO271OUW;
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol:
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
experiment encode accession: ENCSR593MVW
assay title: small RNA-seq
assembly: GRCh38, hg19
encode release date: 2016-05-03
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB436NOU
size range: <200
Data processing See GSM*_README.txt supplementary file linked below
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL18573
Series (1)
GSE88381 small RNA-seq from spleen (ENCSR593MVW)
BioSample SAMN05897023
SRA SRX2244281
Named Annotation GSM2343888_ENCFF019RRP_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343888_ENCFF043RCY_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343888_ENCFF970WFX_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343888_ENCFF704TKY_minus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2343888_ENCFF019RRP_plus_strand_signal_of_all_reads_GRCh38.bigWig 5.6 Mb (ftp)(http) BIGWIG
GSM2343888_ENCFF035VZY_plus_strand_signal_of_unique_reads_hg19.bigWig 1.2 Mb (ftp)(http) BIGWIG
GSM2343888_ENCFF043RCY_plus_strand_signal_of_unique_reads_GRCh38.bigWig 826.5 Kb (ftp)(http) BIGWIG
GSM2343888_ENCFF045ACM_minus_strand_signal_of_all_reads_hg19.bigWig 5.2 Mb (ftp)(http) BIGWIG
GSM2343888_ENCFF183GYF_gene_quantifications_hg19.tsv.gz 267.3 Kb (ftp)(http) TSV
GSM2343888_ENCFF253XRU_gene_quantifications_GRCh38.tsv.gz 284.2 Kb (ftp)(http) TSV
GSM2343888_ENCFF471WHZ_plus_strand_signal_of_all_reads_hg19.bigWig 5.2 Mb (ftp)(http) BIGWIG
GSM2343888_ENCFF600FPE_minus_strand_signal_of_unique_reads_hg19.bigWig 863.9 Kb (ftp)(http) BIGWIG
GSM2343888_ENCFF704TKY_minus_strand_signal_of_unique_reads_GRCh38.bigWig 807.7 Kb (ftp)(http) BIGWIG
GSM2343888_ENCFF970WFX_minus_strand_signal_of_all_reads_GRCh38.bigWig 5.0 Mb (ftp)(http) BIGWIG
GSM2343888_ENCLB436NOU_README.txt.gz 1020 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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