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Sample GSM2343888 Query DataSets for GSM2343888
Status Public on Nov 08, 2016
Title small RNA-seq from spleen (ENCLB436NOU)
Sample type SRA
 
Source name Homo sapiens spleen tissue female adult (51 year)
Organism Homo sapiens
Characteristics tissue_type: spleen
biomaterial_type: tissue
description: Spleen tissue aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS253SDK (SAMN05897023)
age: 51 year
dev stage: adult
donor_id: ENCDO271OUW
Sex: female
lab: Thomas Gingeras, CSHL
link: ENCBS253SDK at ENCODE; https://www.encodeproject.org/ENCBS253SDK/
link: Derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol: https://www.encodeproject.org/documents/0aa9a0a9-adc2-48ff-b541-d6dfabf60c6a/@@download/attachment/LID296623.pdf
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Description https://www.encodeproject.org/experiments/ENCSR593MVW/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
experiment encode accession: ENCSR593MVW
assay title: small RNA-seq
assembly: GRCh38, hg19
encode release date: 2016-05-03
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB436NOU
size range: <200
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL18573
Series (1)
GSE88381 small RNA-seq from spleen (ENCSR593MVW)
Relations
BioSample SAMN05897023
SRA SRX2244281
Named Annotation GSM2343888_ENCFF019RRP_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343888_ENCFF043RCY_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343888_ENCFF970WFX_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343888_ENCFF704TKY_minus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2343888_ENCFF019RRP_plus_strand_signal_of_all_reads_GRCh38.bigWig 5.6 Mb (ftp)(http) BIGWIG
GSM2343888_ENCFF035VZY_plus_strand_signal_of_unique_reads_hg19.bigWig 1.2 Mb (ftp)(http) BIGWIG
GSM2343888_ENCFF043RCY_plus_strand_signal_of_unique_reads_GRCh38.bigWig 826.5 Kb (ftp)(http) BIGWIG
GSM2343888_ENCFF045ACM_minus_strand_signal_of_all_reads_hg19.bigWig 5.2 Mb (ftp)(http) BIGWIG
GSM2343888_ENCFF183GYF_gene_quantifications_hg19.tsv.gz 267.3 Kb (ftp)(http) TSV
GSM2343888_ENCFF253XRU_gene_quantifications_GRCh38.tsv.gz 284.2 Kb (ftp)(http) TSV
GSM2343888_ENCFF471WHZ_plus_strand_signal_of_all_reads_hg19.bigWig 5.2 Mb (ftp)(http) BIGWIG
GSM2343888_ENCFF600FPE_minus_strand_signal_of_unique_reads_hg19.bigWig 863.9 Kb (ftp)(http) BIGWIG
GSM2343888_ENCFF704TKY_minus_strand_signal_of_unique_reads_GRCh38.bigWig 807.7 Kb (ftp)(http) BIGWIG
GSM2343888_ENCFF970WFX_minus_strand_signal_of_all_reads_GRCh38.bigWig 5.0 Mb (ftp)(http) BIGWIG
GSM2343888_ENCLB436NOU_README.txt.gz 1020 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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