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Sample GSM232216 Query DataSets for GSM232216
Status Public on May 07, 2008
Title GUYT2_50301
Sample type RNA
 
Source name breast
Organism Homo sapiens
Characteristics samplename:GUYT2_50301
series:GUYT2
age:42
grade:2
size:1.97
er:1
pgr:1
node:0
t.rfs:3287
e.rfs:0
t.dmfs:3287
e.dmfs:0
treatment:tamoxifen
Extracted molecule total RNA
Extraction protocol Isolation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc)olation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc).
Label biotin
Label protocol Approximately 1 microgram of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures.
Scan protocol standard Affymetrix procedures.
Description Tumor samples from Tamoxifen-only treated primary breast cancer patients
Data processing RMA Bioconductor
 
Submission date Sep 28, 2007
Last update date Aug 28, 2018
Contact name Benjamin Haibe-Kains
E-mail(s) benjamin.haibe.kains@utoronto.ca
Phone +14165818626
Organization name Princess Margaret Cancer Centre
Department Princess Margaret Research
Lab Bioinformatics and Computational Genomics
Street address 610 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G 2M9
Country Canada
 
Platform ID GPL570
Series (1)
GSE9195 Predicting prognosis using molecular profiling in estrogen receptor-positive breast cancer treated with tamoxifen
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE RMA normalized signal intensity + gene median centering

Data table
ID_REF VALUE
1007_s_at -0.840425619
1053_at 0.169240109
117_at 0.509491737
121_at -0.014811329
1255_g_at 0
1294_at 0.294471148
1316_at -0.051563077
1320_at 0.191413098
1405_i_at 2.342731046
1431_at -0.070455731
1438_at -0.30528321
1487_at 0.178040632
1494_f_at 0.437101259
1552256_a_at -0.031747178
1552257_a_at -0.068927873
1552258_at 0.021133295
1552261_at -0.091420431
1552263_at 0.49622382
1552264_a_at 0.567400905
1552266_at 0.008624224

Total number of rows: 54675

Table truncated, full table size 1230 Kbytes.




Supplementary file Size Download File type/resource
GSM232216.CEL.gz 8.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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