|
| Status |
Public on Sep 20, 2016 |
| Title |
06S14031536 |
| Sample type |
RNA |
| |
|
| Source name |
06S14031536
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: colon
|
| Treatment protocol |
NA
|
| Growth protocol |
NA
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was isolated from FFPE tissues (100 ng)
|
| Label |
n/a
|
| Label protocol |
Data collection was performed on the nCounter Digital Analyzer, which counted and tabulated the individual fluorescent barcodes for target RNA molecules in each sample following the manufacturer’s instructions
|
| |
|
| Hybridization protocol |
Samples were hybridized with the specific capture probes and barcoded reporter probes at 65°C for 18 hours and then loaded into the nCounter Pre-station for purification of the hybridized probes
|
| Scan protocol |
standard NanoString protocol
|
| Data processing |
The raw data were analyzed with nSolver Analysis Software for gene expression analysis
|
| |
|
| Submission date |
Sep 07, 2016 |
| Last update date |
Sep 20, 2016 |
| Contact name |
Bernard Omolo |
| E-mail(s) |
bomolo@uscupstate.edu
|
| Phone |
864-503-5362
|
| Organization name |
University of South Carolina - Upstate
|
| Department |
Mathematics and Computer Science
|
| Street address |
800 University Way
|
| City |
Spartanburg |
| State/province |
SC |
| ZIP/Postal code |
29303 |
| Country |
USA |
| |
|
| Platform ID |
GPL22404 |
| Series (2) |
| GSE86561 |
Adaptation of a RAS pathway activation signature from FF to FFPE tissues in colorectal cancer (FFPE NanoString) |
| GSE86566 |
Adaptation of a RAS pathway activation signature from FF to FFPE tissues in colorectal cancer |
|
