GEO help: Mouse over screen elements for information.
Status
Public on Jan 15, 2008
Title
Liver from Nrf2 k.o. mice, biological replicate 2
Sample type
RNA
Source name
Liver, Nrf2 deficient
Organism
Mus musculus Characteristics
mouse strain: C57B/SV129
Extracted molecule
total RNA
Extraction protocol
Phenol/Chloroform extraction; RNeasy MinElute kit
Label
biotin
Label protocol
Biotinylation; IVT Labeling Kit (Affymetrix Inc., Santa Clara, CA)
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
mRNA pooled from 3 individuals
Data processing
Affymetrix GCOS 1.4 software (Affymetrix); Probability scores and fold changes were calculated using the Rosetta Resolver software (Rosetta Biosoftware, Seattle, WA).
Submission date
Sep 06, 2007
Last update date
Aug 28, 2018
Contact name
Stefan Zoller
E-mail(s)
szoller@env.ethz.ch Organization name
ETH Zurich
Department
Genetic Diversity Centre
Street address
Universitatstrasse 16
City
Zurich
ZIP/Postal code
8092
Country
Switzerland
Platform ID
GPL1261 Series (1)
GSE8969 Impaired liver regeneration in Nrf2 knockout mice caused by ROS-mediated insulin/IGF-1 resistance
Relations Reanalyzed by
GSE119085
Data table header descriptions ID_REF VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
180.719
P
8.14279e-05
AFFX-BioB-M_at
313.033
P
4.42873e-05
AFFX-BioB-3_at
169.214
P
4.42873e-05
AFFX-BioC-5_at
211.56
P
6.02111e-05
AFFX-BioC-3_at
290.757
P
5.16732e-05
AFFX-BioDn-5_at
1612.4
P
4.42873e-05
AFFX-BioDn-3_at
2796.84
P
4.42873e-05
AFFX-CreX-5_at
8009.15
P
5.16732e-05
AFFX-CreX-3_at
9736.05
P
4.42873e-05
AFFX-DapX-5_at
382.967
P
4.42873e-05
AFFX-DapX-M_at
664.574
P
9.4506e-05
AFFX-DapX-3_at
885.986
P
4.42873e-05
AFFX-LysX-5_at
45.6608
P
6.02111e-05
AFFX-LysX-M_at
73.4101
P
0.00010954
AFFX-LysX-3_at
128.559
P
4.42873e-05
AFFX-PheX-5_at
61.2351
P
5.16014e-05
AFFX-PheX-M_at
73.0282
P
6.02111e-05
AFFX-PheX-3_at
92.4814
P
0.00141043
AFFX-ThrX-5_at
98.9767
P
4.42873e-05
AFFX-ThrX-M_at
122.381
P
4.42246e-05
45101 1383 Kbytes .Supplementary file Size Download File type/resource GSM227408.CEL.gz
3.4 Mb
(ftp) (http) CEL
GSM227408.CHP.gz
249.6 Kb
(ftp) (http) CHP
Processed data included within Sample table
