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GEO accession:
Sample GSM22508
Query DataSets for GSM22508
Status
Public on Jun 07, 2004
Title
whole tissue section from case 1507
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 1507 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=1507;Tumor.type=D;Size=3.7;Grade=3;Nodes=0/40;ER=Pos;PR=Pos;HER2=Neg ;Age=70;DFS=70;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.6341383
4211.0
4020.0
0.6443256649775753
6459
-1.0893373
984.0
523.0
0.46997744241657874
16790
0.1322593
267.0
348.0
1.0960082207646242
4210
-0.2353423
168.0
175.0
0.8494836136190912
13392
0.8487263
4341.0
13282.0
1.8009098364300726
1575
0.3393253
144.0
223.0
1.2651644595257305
9300
0.5151513
274.5
462.0
1.4291439921383953
5306
0.4087833
204.0
325.0
1.3275653647995669
4514
0.2251103
178.0
252.5
1.1688666900736755
8664
0.7763903
160.5
332.0
1.712839819212426
1645
1.7314633
264.5
1007.0
3.320643200219358
13828
0.9932403
203.0
480.0
1.9906500372408755
3944
0.1469933
163.5
221.0
1.107258990429436
500
-0.0387693
2428.0
3193.0
0.9734853695788908
21226
-0.0884183
204.0
232.5
0.940553530309599
15545
-2.0801003
1825.0
484.0
0.23649807870525544
6346
0.4561643
506.0
790.0
1.3718894187881463
4381
0.5054553
154.0
266.0
1.4195711274116316
3385
0.5551523
4714.0
11735.0
1.469323193652674
19553
0.6457103
146.0
278.0
1.5645087740099333
Total number of rows:
22575
Table truncated, full table size
1064 Kbytes
.
Supplementary data files not provided
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