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GEO accession:
Sample GSM22504
Query DataSets for GSM22504
Status
Public on Jun 07, 2004
Title
whole tissue section from case 1389
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 1389 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=1389;Tumor.type=D;Size=1.7;Grade=2;Nodes=0/1;ER=Pos;PR=Pos;HER2=Neg;Age=80;DFS=94;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-1.4275383
5858.0
3150.0
0.3717648758526383
6459
-1.2922373
891.0
327.5
0.40831743501994
16790
-0.1700693
311.0
212.0
0.8888002818125949
4210
-0.1349363
192.0
119.0
0.9107104738841526
13392
0.7121123
3987.0
10306.0
1.638200352806652
1575
0.3842293
239.0
235.0
1.305162537868333
9300
0.5743433
240.0
274.0
1.488998948495553
5306
-0.1250893
187.0
116.0
0.9169476622995891
4514
-0.4266693
200.5
100.0
0.7439775933363968
8664
0.3158783
172.5
148.0
1.2447688700783561
1645
1.3152333
311.0
672.0
2.4884256528041844
13828
0.8409603
171.5
221.5
1.7912415329531184
3944
-0.1403833
181.0
110.0
0.9072780654492225
500
-0.3384583
2472.5
2478.5
0.7908864078272273
21226
0.3803103
219.0
210.0
1.3016217630437648
15545
-2.7263373
2375.0
363.0
0.1511091368121573
6346
-0.0963193
328.0
240.0
0.9354166976805339
4381
-0.1520123
148.0
84.5
0.8999942461674886
3385
1.0133723
6180.0
21153.5
2.0186234836323638
19553
0.2721253
156.0
126.0
1.2075849641592051
Total number of rows:
22575
Table truncated, full table size
1062 Kbytes
.
Supplementary data files not provided
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