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GEO accession:
Sample GSM22499
Query DataSets for GSM22499
Status
Public on Jun 07, 2004
Title
whole tissue section from case 1304
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 1304 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=1304;Tumor.type=D;Size=2;Grade=3;Nodes=0/14;ER=Pos;PR=Pos;HER2=Neg;Age=57;DFS=20;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.1339433
3770.0
7720.0
0.9113372713812886
6459
0.6678603
817.5
2064.5
1.5887146990421492
16790
-0.9231593
177.0
104.0
0.5273530559326158
4210
0.2246723
141.0
185.0
1.1685116376501448
13392
-0.2704033
3421.0
6136.0
0.8290881955737491
1575
0.2514633
97.0
128.0
1.190413462046752
9300
0.6210623
234.0
427.0
1.53800710076194
5306
-0.1030783
126.5
131.0
0.931044408954658
4514
0.0185833
98.5
110.5
1.0129642854007601
8664
1.4985353
108.0
346.5
2.8255558558619076
1645
0.8802553
196.0
424.0
1.8407004157607383
13828
0.9737663
103.0
226.5
1.9639611338934255
3944
0.2979563
158.0
220.0
1.2294013731024045
500
-0.4095543
2199.0
3133.5
0.752856079897458
21226
0.3725953
149.0
218.0
1.2946799248240621
15545
-2.3878393
1566.0
423.0
0.1910683866836182
6346
0.4447033
372.0
636.0
1.361034106394262
4381
0.1209563
86.0
103.5
1.0874552437294358
3385
0.1582303
4062.0
10552.0
1.1159174536595058
19553
1.1272403
204.5
532.5
2.1844043696732753
Total number of rows:
22575
Table truncated, full table size
1061 Kbytes
.
Supplementary data files not provided
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