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GEO accession:
Sample GSM22491
Query DataSets for GSM22491
Status
Public on Jun 07, 2004
Title
whole tissue section from case 1085
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 1085 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=1085;Tumor.type=D;Size=4.7;Grade=2;Nodes=0/8;ER=Pos;PR=Pos;HER2=Neg;Age=48;DFS=101;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.8212613
3334.0
3164.0
0.5659471081465004
6459
-0.4295943
881.0
820.0
0.7424709529470208
16790
-0.0393343
221.0
210.0
0.973103738089997
4210
0.3006943
180.0
213.0
1.231736758825172
13392
-0.0915543
3477.5
5822.0
0.9385114029154693
1575
0.0944903
108.5
100.0
1.0676881702747363
9300
0.4877543
259.0
378.0
1.4022597346918606
5306
0.0414313
158.0
150.0
1.0291344321904803
4514
0.0071153
130.0
116.0
1.0049440298141974
8664
3.1863143
147.0
1494.0
9.102822956247389
1645
0.6033293
259.5
413.5
1.519218117852032
13828
1.4895773
144.0
402.5
2.808065851260688
3944
-0.0892853
164.0
142.0
0.9399881969611948
500
-0.1054963
2190.0
3290.5
0.9294851973724906
21226
-0.3535933
172.0
123.0
0.7826326211622465
15545
-2.1792513
1344.0
357.0
0.22079036099051874
6346
2.1198173
415.0
2330.5
4.3463888000403195
4381
0.5743013
196.0
290.0
1.4889555652296047
3385
1.5748613
3990.0
23074.0
2.979067740679602
19553
-0.0060443
133.0
118.0
0.9958190463109318
Total number of rows:
22575
Table truncated, full table size
1062 Kbytes
.
Supplementary data files not provided
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