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GEO accession:
Sample GSM22484
Query DataSets for GSM22484
Status
Public on Jun 07, 2004
Title
whole tissue section from case 856
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 856 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=856;Tumor.type=D;Size=1.6;Grade=2;Nodes=0/16;ER=Pos;PR=Pos;HER2=ND;Age=73;DFS=88;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-1.0982523
4466.5
3212.0
0.4670820406473287
6459
0.2613213
1005.5
1485.5
1.198575885686523
16790
-0.0804943
219.0
230.0
0.9457338690387646
4210
0.1696983
142.5
173.0
1.1248229792287798
13392
0.4853273
3495.0
8293.0
1.3999032819489512
1575
0.2990403
187.0
255.0
1.2303250829140782
9300
0.6506193
238.5
425.5
1.5698419928159892
5306
0.2309093
190.0
247.0
1.173574057533039
4514
0.2495853
138.0
177.0
1.1888649020424842
8664
2.8666333
162.0
1360.0
7.293611108315566
1645
1.0740043
278.0
672.0
2.1052674890401324
13828
1.2281853
193.0
513.5
2.3427199527944165
3944
0.3437723
306.0
444.0
1.2690707346242673
500
-0.2840833
2252.0
2572.0
0.8212636320658946
21226
0.3898173
253.0
376.0
1.3102268158841635
15545
-1.6011343
1687.0
674.0
0.32961774077580863
6346
0.8526723
407.0
856.0
1.805842340111286
4381
0.5814693
170.0
282.0
1.4963719885877187
3385
0.6594153
4335.0
12275.0
1.5794419995806268
19553
0.6972263
225.0
413.5
1.6213839019584957
Total number of rows:
22575
Table truncated, full table size
1064 Kbytes
.
Supplementary data files not provided
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