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GEO accession:
Sample GSM22479
Query DataSets for GSM22479
Status
Public on Jun 07, 2004
Title
whole tissue section from case 772
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 772 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=772;Tumor.type=D;Size=2.5;Grade=2;Nodes=0/18;ER=Pos;PR=Pos;HER2=Neg;Age=68;DFS=69;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.7850543
2530.0
3126.0
0.5803303841554601
6459
-0.5664103
775.0
822.0
0.675295315788743
16790
-0.8093913
173.5
122.0
0.5706228259432417
4210
-0.2348193
111.0
111.0
0.8497917008463824
13392
-0.4492133
2722.0
4545.0
0.7324424465789949
1575
0.1538133
104.0
138.0
1.1125057172943826
9300
0.2576563
163.0
253.0
1.1955349561700896
5306
0.3464333
139.5
225.5
1.2714132342989553
4514
-0.0403863
117.0
137.0
0.9723949491291541
8664
0.5847763
119.0
224.0
1.4998066141478055
1645
0.7284753
150.0
327.0
1.6568869026686777
13828
1.0192633
127.0
335.0
2.026883305117627
3944
0.0523733
115.0
144.0
1.0369691534146872
500
0.2311773
1611.0
3904.5
1.1737924614931288
21226
-0.2164703
166.0
181.0
0.8606690061334695
15545
-0.5104063
1258.0
1573.0
0.7020247977020252
6346
0.1976523
315.0
516.0
1.146830539498748
4381
0.5280973
136.5
252.0
1.4420256245010787
3385
0.2962503
3131.5
9939.5
1.2279485622217121
19553
1.2054073
201.0
652.0
2.3060224898553394
Total number of rows:
22575
Table truncated, full table size
1060 Kbytes
.
Supplementary data files not provided
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