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GEO accession:
Sample GSM22476
Query DataSets for GSM22476
Status
Public on Jun 07, 2004
Title
whole tissue section from case 687
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 687 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=687;Tumor.type=D;Size=3.5;Grade=3;Nodes=3/16;ER=Pos;PR=Pos;HER2=Neg;Age=73;DFS=142;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.5989843
4295.5
6421.5
0.6602186238184511
6459
-0.0363063
923.0
1372.0
0.9751483262243842
16790
2.0337283
222.5
1205.0
4.094616516416873
4210
0.5386953
250.0
458.0
1.4526580160481046
13392
0.0676333
3382.0
8005.0
1.0479957732371903
1575
0.3264203
142.0
207.5
1.253898168123673
9300
1.1677453
210.0
598.0
2.246603452853309
5306
0.1209493
194.0
253.0
1.08745006589369
4514
0.2542393
146.0
203.0
1.1927066574235834
8664
1.6311503
152.0
585.0
3.097598377657184
1645
0.9083633
225.0
534.0
1.876915160005202
13828
1.9587163
164.0
810.5
3.887159887905343
3944
0.2926063
148.0
212.0
1.2248508670955451
500
-0.7364073
2276.5
2506.5
0.6002323752953723
21226
0.9907743
196.0
486.0
1.987250729423632
15545
-3.3462073
1628.5
216.0
0.09833122505216353
6346
-0.5312663
377.5
331.0
0.691947149715017
4381
0.5623103
399.0
788.0
1.476631771811947
3385
1.9024833
4303.0
40439.5
3.7385615259405607
19553
0.8026153
153.0
320.0
1.7442602267088632
Total number of rows:
22575
Table truncated, full table size
1064 Kbytes
.
Supplementary data files not provided
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