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GEO accession:
Sample GSM22470
Query DataSets for GSM22470
Status
Public on Jun 07, 2004
Title
whole tissue section from case 633
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 633 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=633;Tumor.type=D;Size=2.7;Grade=3;Nodes=0/11;ER=Pos;PR=Pos;HER2=Neg;Age=61;DFS=20;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.6925213
4942.0
4568.0
0.6187714593351884
6459
0.2509083
854.0
1133.0
1.1899558646083324
16790
0.5135433
195.5
286.0
1.4275516113681843
4210
0.4689253
146.0
207.5
1.3840779019024958
13392
0.0694373
3991.0
6333.0
1.04930711465009
1575
0.0997693
88.5
99.5
1.071601658377026
9300
0.5736913
179.0
273.0
1.4883268320830803
5306
0.0963053
282.0
309.0
1.0690323144471645
4514
0.0349393
100.0
107.0
1.0245137242358744
8664
1.7233843
110.5
374.0
3.3021008441888062
1645
0.4078853
203.0
276.0
1.3267392332237933
13828
2.1100033
99.0
438.0
4.316922164731421
3944
-0.0173103
120.0
123.0
0.9880731458144162
500
-0.3265743
2446.0
2552.0
0.7974279804573314
21226
0.3134263
152.0
194.0
1.2426555384248756
15545
-2.7753923
1910.5
301.5
0.14605745426167072
6346
1.1761423
382.5
911.0
2.259716509255732
4381
0.2192493
117.0
141.0
1.1641273943816421
3385
1.1579163
5482.5
20461.0
2.2313485289829065
19553
-0.9882753
1003.5
545.0
0.5040801599498811
Total number of rows:
22575
Table truncated, full table size
1060 Kbytes
.
Supplementary data files not provided
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