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GEO accession:
Sample GSM22465
Query DataSets for GSM22465
Status
Public on Jun 07, 2004
Title
whole tissue section from case 469
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 469 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=469;Tumor.type=D;Size=1;Grade=1;Nodes=0/19;ER=Pos;PR=Pos;HER2=Neg ;Age=66;DFS=161;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.9828633
3649.5
3978.0
0.5059746742107484
6459
-0.6556933
723.5
696.0
0.6347704777844672
16790
0.4873423
250.0
439.0
1.4018601838498967
4210
0.2342503
142.0
168.0
1.1762953742594857
13392
-0.0880563
3520.0
7512.0
0.9407894124837525
1575
0.2998353
158.0
205.0
1.2310040094548915
9300
0.1051973
191.0
226.0
1.0756416083077764
5306
-0.2086173
141.0
115.5
0.8653663165551603
4514
-0.0941583
149.0
137.0
0.9368189208471073
8664
0.7185183
165.0
305.5
1.6454903773549525
1645
0.4899303
271.0
488.0
1.4043771782155559
13828
2.1817283
175.0
1061.0
4.536967221652398
3944
-0.1075343
147.0
133.0
0.9281731014624198
500
-0.9481253
1942.5
1920.5
0.5183055105184787
21226
0.1053893
327.0
458.0
1.075784278624543
15545
-1.4945073
1958.0
1273.0
0.35490199241283604
6346
0.0338953
336.5
449.0
1.023772396316713
4381
0.1161253
120.5
121.5
1.0838200820584472
3385
1.1681973
3864.5
20419.5
2.2473073735877342
19553
0.6524843
180.5
326.5
1.571872813029899
Total number of rows:
22575
Table truncated, full table size
1063 Kbytes
.
Supplementary data files not provided
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