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GEO accession:
Sample GSM22457
Query DataSets for GSM22457
Status
Public on Jun 07, 2004
Title
whole tissue section from case 295
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 295 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=295;Tumor.type=D;Size=3.5;Grade=2;Nodes=3/21;ER=Pos;PR=Pos;HER2=Neg;Age=52;DFS=118;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-1.4053053
3483.0
2946.0
0.3775382036428231
6459
-0.3393353
831.5
1061.5
0.7904055590280972
16790
0.3033623
179.0
293.0
1.2340170594357673
4210
0.7421933
164.0
366.0
1.672716990519921
13392
0.1431863
2884.0
8095.0
1.1043411760533002
1575
0.2445713
106.0
160.0
1.1847402522190906
9300
0.3952123
127.0
216.0
1.315135937883857
5306
0.2180683
119.0
177.5
1.1631746181022935
4514
0.1638083
100.0
142.0
1.1202404907559318
8664
1.7696313
109.5
496.0
3.4096665280881595
1645
0.0871653
148.0
204.0
1.0622810044296818
13828
2.3771173
123.0
874.0
5.194974123251717
3944
0.5074763
168.0
317.0
1.421561046072936
500
-0.5824203
1797.0
2396.0
0.6678425285284425
21226
0.7482943
166.0
372.5
1.6798047093751793
15545
-3.2924683
1383.0
205.0
0.10206302005393683
6346
0.8506593
301.0
777.0
1.803324113996999
4381
0.5273553
120.0
223.5
1.4412847492767784
3385
1.1242533
3936.5
24293.0
2.179886721718903
19553
2.0879383
321.0
2147.5
4.251401218569569
Total number of rows:
22575
Table truncated, full table size
1061 Kbytes
.
Supplementary data files not provided
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