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GEO accession:
Sample GSM22451
Query DataSets for GSM22451
Status
Public on Jun 07, 2004
Title
whole tissue section from case 68
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 68 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=68;Tumor.type=D;Size=3;Grade=2;Nodes=0/17;ER=Pos;PR=Pos;HER2=Neg;Age=53;DFS=38;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-1.2059413
4369.0
2598.0
0.4334863968126391
6459
1.0162093
934.0
2184.0
2.0225966424012016
16790
-0.2258043
239.0
186.0
0.8551180714485871
4210
-0.0601203
125.0
104.0
0.9591840845058437
13392
0.3058303
3958.5
7441.5
1.236129941983
1575
0.1983313
145.0
147.0
1.1473705449885396
9300
0.3162273
190.0
214.5
1.2450701049414021
5306
-0.1217503
154.5
125.0
0.9190718821199051
4514
-0.2285353
116.0
85.0
0.8535013692473259
8664
2.0289603
142.5
542.0
4.081104371279648
1645
1.2125423
241.0
532.0
2.317456856555329
13828
3.3927653
130.0
1319.0
10.5032586994988
3944
-0.1567983
137.5
107.5
0.8970137072386715
500
-0.1128953
2311.0
2771.0
0.9247304574184848
21226
0.0425763
192.0
178.0
1.029951250856563
15545
-0.9765983
1816.0
1061.0
0.5081766270208242
6346
0.4090693
397.0
514.0
1.3278289336795288
4381
0.0142293
104.0
90.0
1.0099118103171805
3385
0.9425863
4842.0
15075.0
1.921969623465368
19553
0.1997063
120.0
120.0
1.148464418594838
Total number of rows:
22575
Table truncated, full table size
1062 Kbytes
.
Supplementary data files not provided
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