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Sample GSM2241666 Query DataSets for GSM2241666
Status Public on Feb 18, 2019
Title 3413-ARH-18
Sample type SRA
 
Source name pulmonary artery
Organism Homo sapiens
Characteristics sample type: CTEPH
Extracted molecule polyA RNA
Extraction protocol RNA was extracted from mice kidneys with a Qiagen RNEasy kit
RNA libraries were prepared for sequencing using standard Illumina protocols
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 3000
 
Data processing alignment with STAR v 2.5.1b, controlling for unannotated, non-canonical and rare junctions
read count generation during STAR alignment using –quantmode GeneCounts option that works like HTSeq-Count in default mode
Genome_build: GRCh38.84
Supplementary_files_format_and_content: txt files, raw read counts output from STAR alignment using option -–quantmode GeneCounts
 
Submission date Jul 18, 2016
Last update date May 15, 2019
Contact name James West
E-mail(s) j.west@vanderbilt.edu
Organization name Vanderbilt University
Department Medicine
Lab Allergy, Pulmonary and Critical Care
Street address 4200 E 9TH Ave, Box B133
City Nashville
State/province TN
ZIP/Postal code 37201
Country USA
 
Platform ID GPL21290
Series (1)
GSE84538 Expression patterns in chronic thromboembolic pulmonary hypertension
Relations
BioSample SAMN05414770
SRA SRX1959253

Supplementary file Size Download File type/resource
GSM2241666_3413-ARH-18ReadsPerGene.out.tab.gz 316.7 Kb (ftp)(http) TAB
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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