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Sample GSM2241664 Query DataSets for GSM2241664
Status Public on Feb 18, 2019
Title 3413-ARH-15
Sample type SRA
Source name pulmonary artery
Organism Homo sapiens
Characteristics sample type: Control
Extracted molecule polyA RNA
Extraction protocol RNA was extracted from mice kidneys with a Qiagen RNEasy kit
RNA libraries were prepared for sequencing using standard Illumina protocols
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 3000
Data processing alignment with STAR v 2.5.1b, controlling for unannotated, non-canonical and rare junctions
read count generation during STAR alignment using –quantmode GeneCounts option that works like HTSeq-Count in default mode
Genome_build: GRCh38.84
Supplementary_files_format_and_content: txt files, raw read counts output from STAR alignment using option -–quantmode GeneCounts
Submission date Jul 18, 2016
Last update date May 15, 2019
Contact name James West
Organization name Vanderbilt University
Department Medicine
Lab Allergy, Pulmonary and Critical Care
Street address 4200 E 9TH Ave, Box B133
City Nashville
State/province TN
ZIP/Postal code 37201
Country USA
Platform ID GPL21290
Series (1)
GSE84538 Expression patterns in chronic thromboembolic pulmonary hypertension
BioSample SAMN05414768
SRA SRX1959251

Supplementary file Size Download File type/resource 320.3 Kb (ftp)(http) TAB
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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