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GEO accession:
Sample GSM22414
Query DataSets for GSM22414
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 1279
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 1279 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=1279;Tumor.type=D;Size=2;Grade=2;Nodes=0/12;ER=Pos;PR=Pos;HER2=Neg;Age=68;DFS=102;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
1.1878763
3820.0
3939.0
2.2781712305639648
6459
-1.0292313
833.0
252.0
0.4899712311406979
16790
-0.2107863
247.0
154.0
0.8640661054371623
4210
0.0101363
213.0
154.0
1.007050279622022
13392
0.0779733
3201.5
1430.5
1.0555341870093318
1575
0.5865283
282.0
298.0
1.5016281928394979
9300
0.4260263
350.5
321.5
1.3435274518262912
5306
1.0884563
325.0
454.5
2.126463931681817
4514
0.4874363
245.5
247.0
1.4019514915858462
8664
0.4386633
277.5
267.0
1.3553477240630472
1645
-0.3103703
300.0
174.5
0.8064347422269165
13828
0.6631493
324.0
350.0
1.5835352021785172
3944
0.4357863
277.5
266.5
1.3526474046705754
500
0.3005753
2302.0
1172.0
1.2316352865969682
21226
0.0413183
330.0
240.0
1.0290535522112365
15545
-1.6754243
1521.0
252.5
0.31307402139990476
6346
-0.5119513
595.0
271.0
0.7012733308748266
4381
0.7550343
275.0
325.0
1.6876712087816639
3385
-0.6045173
3369.0
920.0
0.6576916181946475
19553
1.2325593
293.5
459.5
2.349833565766698
Total number of rows:
22575
Table truncated, full table size
1054 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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