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GEO accession:
Sample GSM22413
Query DataSets for GSM22413
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 1260
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 1260 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=1260;Tumor.type=D;Size=3.5;Grade=2;Nodes=0/14;ER=Pos;PR=Pos;HER2=Neg;Age=58;DFS=79;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
0.1105543
3665.5
3924.5
1.0796428225981944
6459
-0.4458863
973.0
516.0
0.7341335529973918
16790
0.4655773
251.0
251.0
1.380869364440565
4210
0.1646713
138.0
114.0
1.120910766902237
13392
0.3778223
3453.5
4493.5
1.2993791227383094
1575
0.2119803
227.0
191.0
1.1582765537691955
9300
0.1234283
179.5
143.0
1.089320133379055
5306
-0.0394343
168.0
120.0
0.9730368446263234
4514
-0.0530083
156.5
111.0
0.9639246117879416
8664
1.1687113
156.0
255.0
2.248108102550069
1645
0.5101063
271.0
279.0
1.4241552417839336
13828
0.4404013
182.0
180.0
1.3569810431780307
3944
-0.0004523
141.0
104.0
0.9996869658103233
500
-0.3306733
1870.0
1183.0
0.7951655545301228
21226
0.6187513
316.5
350.0
1.53554526843486
15545
-1.2500923
2006.0
640.0
0.42042140215210677
6346
-0.2110223
363.0
226.5
0.8639248839933154
4381
0.2799813
133.0
119.0
1.214179048920092
3385
-2.0383473
4078.5
822.0
0.24344245889936508
19553
0.7081283
193.0
229.0
1.6336833896740754
Total number of rows:
22575
Table truncated, full table size
1058 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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