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GEO accession:
Sample GSM22411
Query DataSets for GSM22411
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 1206
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 1206 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=1206;Tumor.type=D;Size=4.1;Grade=3;Nodes=0/15;ER=Pos;PR=Neg;HER2=Neg;Age=84;DFS=56;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.9139463
4130.0
3132.0
0.5307313628656768
6459
-0.0670463
814.5
832.0
0.9545902992020466
16790
-0.2355493
272.5
210.0
0.8493614638644518
4210
0.1696083
149.0
142.0
1.124752730148718
13392
0.4782433
3439.0
7386.5
1.3930456548767194
1575
0.3319583
172.0
189.0
1.2587201857152521
9300
0.4011093
187.0
219.0
1.320522450676569
5306
-0.0059693
170.0
145.0
0.9958714494844394
4514
-0.1035103
162.5
128.0
0.9307658258513046
8664
0.3501083
155.0
170.0
1.2746557856880187
1645
2.7440733
327.0
2369.0
6.6995911161302155
13828
1.0847353
175.0
337.5
2.1209865015942193
3944
0.0595653
160.0
142.0
1.0421516177499188
500
-0.5999583
2117.0
1749.5
0.6597731106486756
21226
0.9137483
251.0
448.0
1.88393321561006
15545
-1.0858293
1706.0
926.0
0.47112149418439037
6346
0.4384843
363.0
479.0
1.3551799925438532
4381
0.1644293
132.5
123.5
1.1207226502339274
3385
0.1682333
4186.5
7385.0
1.1236812213227276
19553
1.8598843
177.0
607.0
3.6297847789407105
Total number of rows:
22575
Table truncated, full table size
1061 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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