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GEO accession:
Sample GSM22407
Query DataSets for GSM22407
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 1085
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 1085 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=1085;Tumor.type=D;Size=4.7;Grade=2;Nodes=0/8;ER=Pos;PR=Pos;HER2=Neg;Age=48;DFS=101;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
0.3314133
4952.0
4662.0
1.2582449871457693
6459
-0.4495373
974.0
479.5
0.7322775937273761
16790
0.2359633
219.0
267.0
1.1776928560051667
4210
0.0144663
140.0
162.0
1.0100776188321199
13392
0.6284413
3579.0
3967.5
1.5458938561784072
1575
0.3321213
242.0
305.0
1.2588628248814784
9300
0.2803453
203.0
259.0
1.2144856155225274
5306
0.6375163
215.5
336.5
1.555648405102283
4514
0.2111923
164.0
210.0
1.1576443998835275
8664
0.4445783
174.5
255.0
1.3609164210608873
1645
-0.4306883
211.5
172.5
0.7419076971872907
13828
0.0413753
149.0
174.0
1.0290940820421741
3944
-0.0775023
192.0
199.0
0.9476968731639401
500
0.0295973
2362.0
1481.0
1.0207268818154396
21226
-0.0692863
224.0
225.5
0.9531093158388342
15545
-1.3380273
1782.0
438.0
0.39556123779862773
6346
0.5568183
399.0
492.0
1.47102161312659
4381
0.7653163
197.0
340.0
1.6997426280231112
3385
-1.4080403
4523.0
1073.0
0.3768233538795578
19553
0.5874573
149.0
246.0
1.5025957029073773
Total number of rows:
22575
Table truncated, full table size
1059 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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