GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM22403
Query DataSets for GSM22403
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 878
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 878 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=878;Tumor.type=D/L;Size=1.6;Grade=2;Nodes=0/9;ER=Pos;PR=Neg;HER2=Neg;Age=76;DFS=138;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
0.4399553
4559.0
4883.0
1.3565617102189043
6459
-0.6505153
922.0
256.0
0.6370526562034929
16790
1.1958303
210.0
229.0
2.2907653746165577
4210
0.4252633
246.0
161.5
1.3428169913952444
13392
0.0656483
3722.0
2777.5
1.0465552440587897
1575
0.2376043
149.0
103.0
1.17903297078385
9300
0.2090413
208.0
126.0
1.1559193058938537
5306
0.1876803
159.5
104.5
1.1389305593770707
4514
0.1119283
149.0
96.0
1.0806712414428865
8664
-0.1503193
134.0
78.0
0.9010510746943842
1645
0.1921253
319.5
171.0
1.142445384569311
13828
0.1876683
139.0
96.0
1.138921644731521
3944
-0.1181463
128.5
77.5
0.9213710036865048
500
-0.5447793
2344.0
904.0
0.685496562544823
21226
0.8216273
228.0
194.0
1.7673983349823106
15545
-2.6237593
1652.5
116.5
0.16224447227985547
6346
0.0933873
425.0
203.0
1.0668717756419495
4381
0.0620463
110.5
78.5
1.043945141552785
3385
-1.7769513
4909.5
895.0
0.29179936514804405
19553
1.0860203
271.0
262.0
2.1228753663513373
Total number of rows:
22575
Table truncated, full table size
1055 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
