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GEO accession:
Sample GSM22399
Query DataSets for GSM22399
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 849
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 849 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=849;Tumor.type=D;Size=2;Grade=1;Nodes=0/26;ER=Pos;PR=Pos;HER2=Neg;Age=75;DFS=23;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-1.1447533
4058.5
1309.5
0.452267170291559
6459
-0.6153953
835.0
301.0
0.6527513710908494
16790
0.1596473
368.0
230.5
1.1170137680671741
4210
0.2892903
158.0
115.0
1.222039123645703
13392
0.1955353
3162.0
2777.0
1.1451484597369188
1575
0.3304453
231.0
167.0
1.2574015133630416
9300
0.1634623
195.0
128.0
1.1199716244409317
5306
-0.0084053
171.0
101.5
0.9941909559062034
4514
0.0795443
189.5
118.0
1.0566838931605034
8664
0.2184913
168.0
116.0
1.1635162412015494
1645
0.8740613
355.0
362.0
1.832815335446386
13828
0.3033343
202.0
145.0
1.2339929101767746
3944
0.0866973
159.5
101.5
1.0619359497594856
500
-0.7910493
2136.0
762.0
0.5779238261619327
21226
0.9557193
348.5
376.0
1.9395456245414997
15545
-1.6188353
1657.0
299.5
0.325598279514273
6346
-0.3839193
388.0
168.0
0.7663527972412615
4381
0.1289173
133.5
89.0
1.0934722813401951
3385
-0.8864393
4107.0
1639.5
0.5409477884592853
19553
0.5226513
222.0
183.0
1.4365930186159743
Total number of rows:
22575
Table truncated, full table size
1056 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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