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GEO accession:
Sample GSM22397
Query DataSets for GSM22397
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 829
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 829 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=829;Tumor.type=D;Size=1.2;Grade=2;Nodes=0/9;ER=Pos;PR=Pos;HER2=Neg ;Age=69;DFS=136;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-1.0825703
3963.0
1012.0
0.47218683047477145
6459
-0.1536983
844.0
279.0
0.8989432029906621
16790
-0.1730013
158.5
101.0
0.8869956746555078
4210
0.1718243
104.0
100.5
1.1264815532652628
13392
-1.3254113
2923.5
536.5
0.399035387592677
1575
0.3341463
112.0
112.0
1.260630968453217
9300
0.3300993
130.0
119.0
1.2570997278149654
5306
0.8482623
115.0
146.0
1.8003304150849317
4514
0.2093613
98.0
100.0
1.1561758450720592
8664
-0.1521563
105.5
86.5
0.8999047280567799
1645
0.2513183
178.0
132.0
1.1902936296278561
13828
0.1851223
101.0
100.0
1.1369128462425524
3944
0.1419303
112.0
102.0
1.1033800494462906
500
0.5925413
2009.0
1566.0
1.5079007225007102
21226
0.0613283
146.0
109.5
1.0434255994907862
15545
-1.0620023
1242.0
219.0
0.478966842813032
6346
-0.1162613
352.0
156.0
0.922575612980828
4381
0.5412043
89.0
113.0
1.45518676451427
3385
-1.9624713
3573.0
419.0
0.2565886245474681
19553
0.6457333
100.0
124.5
1.5645338462740164
Total number of rows:
22575
Table truncated, full table size
1048 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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