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GEO accession:
Sample GSM22393
Query DataSets for GSM22393
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 749
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 749 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=749;Tumor.type=D;Size=1.8;Grade=2;Nodes=2/9;ER=Pos;PR=Neg;HER2=Neg;Age=61;DFS=137;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
0.4283923
4446.0
5682.5
1.345732415202852
6459
-0.7533693
816.0
237.5
0.5932166034227199
16790
1.1499603
224.0
264.0
2.2190775734992942
4210
0.2451813
150.0
113.0
1.1852416172068345
13392
0.8429493
4021.5
6942.5
1.7937132928128374
1575
0.3191203
144.5
115.0
1.2475694807812223
9300
0.5486563
222.0
180.5
1.4627228597902238
5306
0.0950073
166.0
111.0
1.0680706101296962
4514
0.5565633
152.0
137.0
1.4707615775945644
8664
-0.0997523
149.0
92.0
0.9331933267907488
1645
0.5196723
254.0
197.0
1.4336287919644695
13828
0.2275473
164.0
119.0
1.1708426097220808
3944
-0.0997523
149.0
92.0
0.9331933267907488
500
0.1525913
2188.0
1631.0
1.111564269610014
21226
0.8258763
241.5
229.0
1.7726105930757066
15545
-3.0922143
1843.0
106.0
0.11726025948268368
6346
1.4696853
440.0
593.0
2.7696138900599756
4381
0.3054123
127.0
104.5
1.235771508230498
3385
-1.4772133
4686.0
1225.0
0.3591820346445721
19553
3.3738413
164.0
847.0
10.366382977733801
Total number of rows:
22575
Table truncated, full table size
1057 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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