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GEO accession:
Sample GSM22390
Query DataSets for GSM22390
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 655
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 655 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=655;Tumor.type=D;Size=2;Grade=3;Nodes=ND;ER=Pos;PR=Pos;HER2=ND;Age=73;DFS=143;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.2370463
4241.5
4634.0
0.848480871790174
6459
0.6673753
889.0
1093.0
1.588181151718255
16790
0.0794603
177.5
156.5
1.056622614628634
4210
0.1674323
92.0
104.0
1.1230579041082454
13392
0.2720363
3444.5
5296.5
1.2075110938730933
1575
0.5176383
96.0
131.0
1.431609061470793
9300
0.6670193
153.0
200.0
1.5877885982572404
5306
0.2292293
116.0
126.0
1.1722085584879594
4514
0.1758763
94.0
106.0
1.129650078008755
8664
0.6555313
101.0
147.0
1.5751951158599313
1645
0.4804723
191.5
212.0
1.3952004705740726
13828
0.1115173
98.0
105.0
1.080363455994135
3944
-0.0445113
109.0
103.0
0.969618613665171
500
-0.5115273
2132.0
1414.0
0.7014793561602759
21226
0.8652783
186.0
263.0
1.821690803698353
15545
-1.5567393
1566.5
390.0
0.3399185543468868
6346
1.4667243
368.5
722.0
2.7639364327505493
4381
0.4071273
95.0
122.0
1.3260429194620693
3385
-1.7396313
4384.5
1382.0
0.29944624171377077
19553
0.4518063
101.0
130.5
1.36775102172712
Total number of rows:
22575
Table truncated, full table size
1055 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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