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GEO accession:
Sample GSM22384
Query DataSets for GSM22384
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 605
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 605 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=605;Tumor.type=D;Size=2.2;Grade=2;Nodes=6/18;ER=Pos;PR=Pos;HER2=Neg;Age=70;DFS=110;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-1.4583063
4018.0
1007.0
0.36392022365771665
6459
-0.4064793
817.0
355.0
0.7544626725769643
16790
1.1153023
197.0
256.0
2.1664028660326995
4210
0.2931283
145.0
116.5
1.2252938090883512
13392
-0.1909933
3200.5
2033.5
0.8760026245698483
1575
0.1604563
123.0
94.0
1.1176405900070963
9300
0.2479043
189.0
141.0
1.1874804140609423
5306
0.0290743
162.0
108.0
1.0203568166324486
4514
0.1410713
169.0
120.0
1.1027233337574212
8664
-0.0839973
143.0
91.0
0.943440166080243
1645
0.6889163
260.0
248.0
1.612071493904395
13828
0.1839803
147.0
110.0
1.1360131300562801
3944
-0.1108633
136.0
86.0
0.9260340471944484
500
-0.2053433
2041.0
1161.0
0.867332181092245
21226
1.0540793
207.0
257.0
2.0763918681745435
15545
-2.7760013
1375.0
115.5
0.1459958331054328
6346
-0.1743173
372.0
194.0
0.8861872160676721
4381
0.2334023
113.0
92.0
1.1756042385918906
3385
-1.5333903
3772.0
880.0
0.3454646621451309
19553
0.4744763
831.0
678.5
1.3894130077707143
Total number of rows:
22575
Table truncated, full table size
1055 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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