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GEO accession:
Sample GSM22383
Query DataSets for GSM22383
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 547
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 547 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=547;Tumor.type=D/L;Size=1.5;Grade=2;Nodes=ND;ER=Pos;PR=Pos;HER2=Neg;Age=74;DFS=129;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
0.8546023
3685.0
10197.5
1.8082601678989099
6459
0.6247483
812.0
1122.0
1.541941727506059
16790
2.5084343
218.0
1003.0
5.690022103190266
4210
0.2800423
159.0
148.0
1.2142300517912712
13392
0.5339883
2865.0
5778.0
1.4479264869235688
1575
0.3827483
191.0
192.0
1.3038233220068274
9300
0.7377073
214.5
278.5
1.6675238038142313
5306
0.1509133
172.0
146.5
1.1102718595870231
4514
0.0689553
188.0
151.5
1.048956463935963
8664
-0.0641153
182.0
133.5
0.956531806193472
1645
1.1599663
267.0
474.0
2.234522271663346
13828
0.3917233
186.0
188.0
1.31195912815531
3944
2.9140953
171.5
1039.5
7.537548569932713
500
0.0232353
1809.0
2055.0
1.0162356106947559
21226
0.9076183
320.0
480.5
1.8759460230771585
15545
-1.1307543
1383.0
552.5
0.45667685895785626
6346
1.9099953
443.0
1424.0
3.7580786563908735
4381
0.1886513
139.0
121.0
1.1396974966269569
3385
-1.1713783
3204.0
1679.0
0.44399706056129656
19553
0.9081803
196.0
286.0
1.876676130198985
Total number of rows:
22575
Table truncated, full table size
1058 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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