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GEO accession:
Sample GSM22380
Query DataSets for GSM22380
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 420
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 420 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=420;Tumor.type=D/L;Size=2;Grade=3;Nodes=ND;ER=Pos;PR=Pos;HER2=Neg;Age=72;DFS=58;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
1.2196123
4529.0
11323.0
2.3288404199081207
6459
0.6948283
1094.0
1108.0
1.618691609641206
16790
-0.1691633
300.0
176.0
0.8893582952466978
4210
-0.0713043
177.0
120.0
0.951777007061954
13392
-0.2055533
3854.0
2921.5
0.8672062189003273
1575
0.5418883
209.0
204.0
1.4558761231202932
9300
0.3257483
257.0
212.0
1.253314244043311
5306
0.1751323
197.0
153.5
1.1290678274293158
4514
0.0984943
208.0
153.0
1.0706549300849892
8664
0.2721743
178.0
150.0
1.2076259858857308
1645
0.4217303
342.0
290.0
1.3395331646799673
13828
0.4254393
219.0
197.0
1.342981414178987
3944
0.0346113
169.0
123.5
1.024280892266788
500
-0.2630593
2331.0
1420.0
0.8333192113348937
21226
1.2833793
310.0
468.0
2.434083348232777
15545
-1.0103703
2032.5
636.5
0.4964189971916092
6346
0.0944123
440.0
293.0
1.0676302915431082
4381
0.3155273
154.5
137.0
1.2444660289102956
3385
-1.5222313
5335.5
1546.0
0.3481471710687767
19553
1.9839393
216.0
536.0
3.9557161752494703
Total number of rows:
22575
Table truncated, full table size
1061 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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