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GEO accession:
Sample GSM22372
Query DataSets for GSM22372
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 289
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 289 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=289;Tumor.type=D;Size=3;Grade=2;Nodes=0/15;ER=Pos;PR=Pos;HER2=Neg;Age=75;DFS=63;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.0843503
4150.5
2923.5
0.9432092550703206
6459
-0.7481383
957.0
298.0
0.5953716066636916
16790
0.9079923
686.5
669.0
1.876432007854479
4210
-0.2089513
151.0
88.0
0.8651659258704749
13392
-0.4615573
3661.0
1827.0
0.7262019830316067
1575
0.3569143
340.0
243.0
1.2806833988520663
9300
0.1876983
185.5
132.0
1.1389447799394328
5306
0.1782583
178.0
127.0
1.1315167096944911
4514
-0.1549963
134.0
83.0
0.8981345872471642
8664
0.9104083
147.0
172.0
1.879576751940668
1645
0.3216753
330.0
231.5
1.249780311203875
13828
-0.0174713
155.0
101.0
0.9879632349544133
3944
-0.0754793
152.0
96.0
0.94902710861942
500
-0.1444813
2178.0
1207.0
0.9047050823860909
21226
0.5965663
197.0
179.0
1.512113195139904
15545
-1.0931083
1895.0
479.5
0.46875058694682936
6346
-0.0992783
355.0
188.0
0.933500060913501
4381
0.2993073
122.0
102.0
1.2305528910736776
3385
-2.3445203
4655.0
561.0
0.19689251807463237
19553
0.6827333
146.0
148.5
1.6051778929233151
Total number of rows:
22575
Table truncated, full table size
1056 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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