|
| Status |
Public on Jun 21, 2016 |
| Title |
TL085 |
| Sample type |
RNA |
| |
|
| Source name |
TL085
|
| Organism |
Homo sapiens |
| Characteristics |
gender: Female
age: 59
smoking status: Non-smoking
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted with QIAGEN RNeasy mini kit according to protocol provided in the kit by the manufacturer. Quality control was performed with Agilent Bioanalyser.
|
| Label |
biotin
|
| Label protocol |
standard Ilumina protocol
|
| |
|
| Hybridization protocol |
standard Ilumina protocol
|
| Scan protocol |
standard Ilumina protocol
|
| Description |
These samples, having names of TLxxx, are the tumor lung counterparts of those previously submitted normal lung samples, which have names like NLxxx. So TL001 is the tumor counterpart of NL001, and TL002 is the tumor counterpart of NL002, and so on.
|
| Data processing |
Data preprocessing of the microarray expression data included standard quality control recommended by Illumina, model based background correction (Ding et al, 2008), and surrogate variable analysis (Leek et al., 2012) to detect and alleviate batch effects33.
|
| |
|
| Submission date |
Jun 20, 2016 |
| Last update date |
Jun 21, 2016 |
| Contact name |
Shih Sheng Jiang |
| E-mail(s) |
ssjiang@nhri.org.tw
|
| Organization name |
National Health Research Institutes
|
| Department |
National Institute of Cancer Research
|
| Street address |
No. 35 Keyan Road, Zhunan County
|
| City |
Miaoli County |
| ZIP/Postal code |
350 |
| Country |
Taiwan |
| |
|
| Platform ID |
GPL6883 |
| Series (1) |
| GSE46539 |
Genetic modifiers of progression-free survival in never-smoking lung adenocarcinoma patients treated with first-line TKIs |
|
