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|
| Status |
Public on Jun 09, 2017 |
| Title |
breast cancer, Tam, patient 126 |
| Sample type |
RNA |
| |
|
| Source name |
Snap frozen primary breast tumor
|
| Organism |
Homo sapiens |
| Characteristics |
response: PD
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted with RNABee (Campro, Veenendaal, the Netherlands) according to the manufacturer procedure
|
| Label |
biotin
|
| Label protocol |
standard Affymetrix protocol
|
| |
|
| Hybridization protocol |
standard Affymetrix protocol
|
| Scan protocol |
standard Affymetrix protocol
|
| Description |
Gene expression data of primary breast tumor
|
| Data processing |
Cel files were processed using the affy and rma R packages, available at www.bioconductor.org.
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| |
|
| Submission date |
Jun 02, 2016 |
| Last update date |
Jun 09, 2017 |
| Contact name |
Marcel Smid |
| Organization name |
Erasmus MC
|
| Department |
Medical Oncology
|
| Street address |
Dr. Molewaterplein 50
|
| City |
Rotterdam |
| ZIP/Postal code |
PO Box 2040, 3000CA |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL13158 |
| Series (2) |
| GSE82172 |
Expression data from primary breast tumors, M0 patients |
| GSE82173 |
Primary breast tumors |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
RMA signal intensity in 2log scale |
| Data table |
| ID_REF |
VALUE |
| 1007_PM_s_at |
9.760391015 |
| 1053_PM_at |
7.477512095 |
| 117_PM_at |
4.945035172 |
| 121_PM_at |
6.041479788 |
| 1255_PM_g_at |
3.193332523 |
| 1294_PM_at |
6.776598471 |
| 1316_PM_at |
5.663688833 |
| 1320_PM_at |
3.072827319 |
| 1405_PM_i_at |
7.924347426 |
| 1431_PM_at |
3.274195646 |
| 1438_PM_at |
4.003323949 |
| 1487_PM_at |
6.260468449 |
| 1494_PM_f_at |
6.432152378 |
| 1552256_PM_a_at |
7.283396978 |
| 1552257_PM_a_at |
6.632532918 |
| 1552258_PM_at |
3.451042302 |
| 1552261_PM_at |
3.104961607 |
| 1552263_PM_at |
5.704460695 |
| 1552264_PM_a_at |
5.784657978 |
| 1552266_PM_at |
3.13263975 |
Total number of rows: 54715
Table truncated, full table size 1373 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM2185422_SXS102534.93.CEL.gz |
2.1 Mb |
(ftp)(http) |
CEL |
| Processed data included within Sample table |
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